| Rank | Team | RPI | SOS | QWF | Selection Sum |
|---|---|---|---|---|---|
| 1 | Torrey Pines ( 19 - 2 ) | 1 | 4 | 2 | 7 |
| 2 | La Costa Canyon ( 19 - 4 ) | 2 | 7 | 1 | 10 |
| 3 | Scripps Ranch ( 13 - 5 ) | 4 | 5 | 4 | 13 |
| 4 | Palos Verdes ( 13 - 5 ) | 5 | 4 | 7 | 16 |
| 5 | Cathedral Catholic, CA ( 9 - 9 ) | 6 | 3 | 8 | 17 |
| 6 | Poway ( 10 - 9 ) | 8 | 2 | 12 | 22 |
| 7 | St. Ignatius Prep, CA ( 9 - 9 ) | 5 | 9 | 9 | 23 |
| 8 | Del Norte ( 14 - 7 ) | 5 | 10 | 9 | 24 |
| 9 | Santa Margarita CS ( 12 - 5 ) | 8 | 7 | 9 | 24 |
| 10 | Glenbrook South ( 16 - 9 ) | 7 | 14 | 6 | 27 |
| 11 | La Jolla HS ( 17 - 5 ) | 3 | 22 | 3 | 28 |
| 12 | Rancho Bernardo ( 12 - 7 ) | 12 | 6 | 13 | 31 |
| 13 | Mater Dei, CA ( 15 - 7 ) | 2 | 28 | 3 | 33 |
| 14 | Potomac School ( 12 - 9 ) | 11 | 9 | 16 | 36 |
| 15 | Foothill, Santa Ana ( 14 - 6 ) | 4 | 32 | 4 | 40 |
| 16 | Pacific Ridge ( 13 - 2 ) | 10 | 20 | 11 | 41 |
| 17 | Menlo-Atherton ( 10 - 10 ) | 9 | 22 | 10 | 41 |
| 18 | Coronado, CA ( 9 - 10 ) | 11 | 21 | 10 | 42 |
| 19 | Marin Catholic, CA ( 10 - 10 ) | 11 | 13 | 18 | 42 |
| 20 | Canyon Crest Academy ( 9 - 8 ) | 16 | 11 | 18 | 45 |
| 21 | Granite Hills ( 17 - 2 ) | 13 | 32 | 7 | 52 |
| 22 | Arapahoe ( 11 - 6 ) | 8 | 36 | 8 | 52 |
| 23 | Otay Ranch ( 9 - 8 ) | 19 | 9 | 25 | 53 |
| 24 | Westview, CA ( 10 - 11 ) | 17 | 12 | 24 | 53 |
| 25 | Carondelet ( 8 - 14 ) | 18 | 21 | 16 | 55 |
| 26 | San Marcos, SD ( 16 - 4 ) | 7 | 43 | 6 | 56 |
| 27 | San Dieguito Academy ( 13 - 6 ) | 24 | 17 | 16 | 57 |
| 28 | Mission Hills ( 11 - 9 ) | 23 | 18 | 17 | 58 |
| 29 | El Camino ( 10 - 11 ) | 20 | 8 | 31 | 59 |
| 30 | Hilltop ( 10 - 8 ) | 21 | 13 | 28 | 62 |
| 31 | Our Lady of Peace ( 16 - 3 ) | 14 | 35 | 14 | 63 |
| 32 | Helix Charter ( 10 - 7 ) | 18 | 19 | 27 | 64 |
| 33 | Eastlake, CA ( 17 - 2 ) | 9 | 54 | 5 | 68 |
| 34 | San Clemente ( 13 - 5 ) | 17 | 41 | 12 | 70 |
| 35 | La Jolla CDS ( 9 - 8 ) | 31 | 15 | 29 | 75 |
| 36 | Olympian ( 16 - 5 ) | 22 | 37 | 19 | 78 |
| 37 | Patrick Henry, CA ( 6 - 12 ) | 32 | 14 | 32 | 78 |
| 38 | Grossmont ( 10 - 8 ) | 30 | 23 | 26 | 79 |
| 39 | Mt. Carmel, CA ( 8 - 10 ) | 25 | 24 | 30 | 79 |
| 40 | Bishop's School ( 13 - 7 ) | 15 | 51 | 15 | 81 |
| 41 | Carlsbad ( 1 - 16 ) | 36 | 1 | 44 | 81 |
| 42 | Newport Harbor ( 7 - 11 ) | 22 | 26 | 33 | 81 |
| 43 | Chaminade College Prep ( 11 - 8 ) | 21 | 29 | 31 | 81 |
| 44 | Francis Parker School ( 11 - 6 ) | 27 | 36 | 20 | 83 |
| 45 | Ramona ( 10 - 10 ) | 26 | 29 | 34 | 89 |
| 46 | Rancho Buena Vista ( 0 - 4 ) | 41 | 28 | 21 | 90 |
| 47 | University City, SD ( 11 - 5 ) | 28 | 42 | 22 | 92 |
| 48 | Mission Bay ( 12 - 10 ) | 29 | 38 | 35 | 102 |
| 49 | Santa Fe Christian ( 4 - 12 ) | 38 | 25 | 39 | 102 |
| 50 | Preuss School ( 9 - 4 ) | 33 | 49 | 23 | 105 |
| 51 | San Diego ( 9 - 7 ) | 34 | 40 | 33 | 107 |
| 52 | Serra ( 6 - 9 ) | 37 | 34 | 38 | 109 |
| 53 | Bonita Vista ( 3 - 14 ) | 44 | 16 | 50 | 110 |
| 54 | Mira Mesa ( 9 - 8 ) | 35 | 39 | 36 | 110 |
| 55 | Chula Vista ( 8 - 11 ) | 40 | 33 | 40 | 113 |