| Rank | Team | RPI | SOS | QWF | Selection Sum |
|---|---|---|---|---|---|
| 1 | Saint Ignatius Prep ( 16 - 2 ) | 2 | 3 | 2 | 7 |
| 2 | Monte Vista/Danville ( 18 - 1 ) | 1 | 6 | 1 | 8 |
| 3 | Foothill-Tustin ( 9 - 5 ) | 1 | 1 | 7 | 9 |
| 4 | La Costa Canyon ( 18 - 5 ) | 1 | 7 | 2 | 10 |
| 5 | Phillips Exeter ( 12 - 7 ) | 2 | 1 | 7 | 10 |
| 6 | De LaSalle ( 15 - 6 ) | 3 | 7 | 3 | 13 |
| 7 | Boys' Latin ( 21 - 0 ) | 1 | 11 | 1 | 13 |
| 8 | Grossmont ( 13 - 5 ) | 6 | 1 | 8 | 15 |
| 9 | Garden City ( 19 - 2 ) | 1 | 14 | 1 | 16 |
| 10 | Monte Vista ( 15 - 3 ) | 8 | 4 | 6 | 18 |
| 11 | Georgetown Prep ( 22 - 0 ) | 2 | 14 | 2 | 18 |
| 12 | Mira Costa ( 15 - 2 ) | 4 | 14 | 1 | 19 |
| 13 | Rancho Bernardo ( 11 - 8 ) | 5 | 6 | 9 | 20 |
| 14 | Granite Hills ( 16 - 5 ) | 9 | 5 | 7 | 21 |
| 15 | Torrey Pines ( 15 - 6 ) | 3 | 15 | 3 | 21 |
| 16 | San Ramon Valley ( 14 - 6 ) | 6 | 10 | 5 | 21 |
| 17 | Cate School ( 13 - 1 ) | 2 | 18 | 3 | 23 |
| 18 | Poway ( 17 - 3 ) | 2 | 21 | 1 | 24 |
| 19 | Santa Fe Christian ( 10 - 7 ) | 14 | 3 | 11 | 28 |
| 20 | Coronado ( 17 - 6 ) | 7 | 17 | 5 | 29 |
| 21 | Mount St Joseph ( 12 - 7 ) | 10 | 9 | 11 | 30 |
| 22 | Menlo School ( 12 - 6 ) | 5 | 18 | 8 | 31 |
| 23 | Saint Margaret's ( 15 - 3 ) | 4 | 24 | 4 | 32 |
| 24 | Harvard-Westlake ( 6 - 9 ) | 10 | 11 | 13 | 34 |
| 25 | University SF ( 9 - 9 ) | 10 | 12 | 14 | 36 |
| 26 | Marin Catholic ( 16 - 6 ) | 4 | 27 | 6 | 37 |
| 27 | Archbishop Spalding ( 9 - 14 ) | 15 | 6 | 17 | 38 |
| 28 | Bishop's School ( 10 - 10 ) | 11 | 16 | 12 | 39 |
| 29 | Westview ( 9 - 7 ) | 12 | 11 | 16 | 39 |
| 30 | Francis Parker ( 11 - 8 ) | 10 | 20 | 10 | 40 |
| 31 | Junipero Serra HS ( 13 - 8 ) | 13 | 13 | 15 | 41 |
| 32 | Helix ( 6 - 7 ) | 17 | 9 | 19 | 45 |
| 33 | Malden Catholic ( 15 - 8 ) | 7 | 21 | 17 | 45 |
| 34 | University-Cathedral ( 10 - 11 ) | 16 | 10 | 20 | 46 |
| 35 | Mount Carmel ( 6 - 9 ) | 21 | 8 | 23 | 52 |
| 36 | Carlsbad ( 3 - 13 ) | 25 | 2 | 26 | 53 |
| 37 | Valhalla ( 10 - 9 ) | 18 | 18 | 18 | 54 |
| 38 | San Marcos ( 0 - 1 ) | 22 | 19 | 17 | 58 |